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Takanori Takeuchi, Miwako Cecile Matsushita, Soichiro Nishiyama, Hisayo Yamane, Kiyoshi Banno, and Ryutaro Tao

. Abbott, A. 2008 Sequencing and annotation of the evergrowing locus in peach [ Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation Tree Genet. Genomes 4 495 507

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Min Wang, Wenrui Liu, Biao Jiang, Qingwu Peng, Xiaoming He, Zhaojun Liang, and Yu’e Lin

gene has been fine-mapped or isolated in cucumber, and little is known about the molecular mechanism involved in HS. In the present study, we combined the BSA ( Michelmore et al., 1991 ) method and whole-genome re-sequencing to analyze heat-tolerant and

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Yu Bai, Ying Zhou, Xiaoqing Tang, Yu Wang, Fangquan Wang, and Jie Yang

)]. Tang et al. (2014) conducted transcriptome sequencing of I. indigotica by using Illumina technology to determine the genes involved in the biosynthesis of the active ingredient and its derivatives at the vegetative growth stage. There is still a lack

Open access

Xinyi Chang, Junli Sun, Lianling Liu, Wang He, and Baolong Zhao

number of reads matched to the exon region of length 1 kb of a specific gene in each 1 million sequencing sequences (reads). The formula used for its calculation is as follows: RPKM = R × 10 9 T × L , where RPKM is the expression level of gene A, R is

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Xiaoxu Yang, Chang Liu, Zhishan Yan, Youjun Fan, Guojun Feng, and Dajun Liu

) (±50 bp). Subsequently, we carried out paired-end sequencing on a HiSEq. 4000, Illumina platform according to the vendor’s recommended protocol. Normalization of gene expression levels and identification of DEGs. Sequencing reads were aligned to the

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Heidi Hargarten, Sumyya Waliullah, Lee Kalcsits, and Loren A. Honaas

, and after storage ( Duan et al., 2017 ; Leisso et al., 2016 ; Nham et al., 2015 ). Global-scale gene expression analysis afforded by second-generation sequencing of mRNA allows the activity of all genes to be monitored simultaneously. This powerful

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Norman B. Best, Xingang Wang, Scottie Brittsan, Eric Dean, Seth J. Helfers, Ryan Homburg, Mariah L. Mobley, Tiffeny L. Spindler, Bofan Xie, Menglu Zhang, Paul M. Hasegawa, Robert J. Joly, David Rhodes, and Brian P. Dilkes

sunflower. Molecular advances permit the identification of single gene effects responsible for shared phenotypic traits across cultivated plants. We have explored the causes of dwarfism in the commercially important dwarf cultivar Sunspot. GAs are essential

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Taifeng Zhang, Jiajun Liu, Sikandar Amanullah, Zhuo Ding, Haonan Cui, Feishi Luan, and Peng Gao

lycopersicum ( Zhao et al., 2016 )]. During this study, whole-genome sequencing and BSA were performed for primary and fine mapping of genes controlling dwarfism. In addition, cleaved amplified polymorphism sequence (CAPS) and kompetitive allele

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Robert L. Jarret, Gloria E. Barboza, Fabiane Rabelo da Costa Batista, Terry Berke, Yu-Yu Chou, Amanda Hulse-Kemp, Neftali Ochoa-Alejo, Pasquale Tripodi, Aniko Veres, Carolina Carrizo Garcia, Gabor Csillery, Yung-Kuang Huang, Erzsebet Kiss, Zsofia Kovacs, Mihaly Kondrak, Magda Lisette Arce-Rodriguez, Marisel A. Scaldaferro, and Antal Szoke

color and intensity. Upon sequencing genes derived from a wild-type and from a white parental line, a single-nucleotide base change resulting in a stop codon was detected. This SNP was associated with both immature fruit color and intensity ( Pan et al

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Jing Ma, Zheng Li, Bin Wang, Shunzhao Sui, and Mingyang Li

, leaf and root hair development, and so on ( Cho and Cosgrove, 2002 ; Fleming et al., 1997 ). Expansins constitute a superfamily, and they can be classified into three subfamilies: α-expansin, β-expansin, and expansin-like genes ( Li et al., 2003