Worldwide, there are cuurently more than 60 germplasm banks that contain tomato (Lycopersicon esculentum) collections ranging is size from a few dozen to several thousands of accessions. In the utilization of these genetic resources sampling from only one germplasm bank may result in limiting available genetic diversity, whereas sampling from several germplasm banks may result in unnecessary redundancy. The current lack of knowledge regarding the relative magnitudes of genetic diversity contained within different collections makes it difficult to develop a core collection that maximizes genetic diversity. Two large tomato collections are housed at the Asian Vegetable Research and Development Center (AVRDC), Sanhua, Taiwan, R.O.C., and the Centro Agronomico Tropical de Investigacion y Enseoanza (CATIE), Turrialba, Costa Rica. Ninety-six accessions from CATIE and 102 accessions from AVRDC were randomly sampled from each base collection. The total of 198 accessions were charcterized for 103 polymorphic RAPD molecular marker bands. The results indicated that the two germplam banks sampled different genetic diversity. In addition, the magnitude of genetic diversity was greater in the AVRDC collection compared to CATIE.
James Nienhuis, Julie Rodriguez, Wilber Phillips, Peter Hanson and Liliway Engle
Peter M. Hanson, Jen-tzu Chen and George Kuo
High-temperature fruit set (heat tolerance) is a critical trait of tomato (Lycopersicon esculentum Mill.) cultivars targeted for lowland wet season production in the tropics and subtropics. Heat-tolerant Asian Vegetable Research and Development Center (AVRDC) tomato line CL5915-93D4-1-0-3 (CL5915) is a valuable source of heat-tolerance genes for tomato genetic improvement. The gene action of heat tolerance in CL5915 was determined by evaluating the F1, F2, BCP1, and BCP2 of a cross between CL5915 and heat-sensitive line UC204A for fruit set traits in two wet-season trials at AVRDC. Parent-offspring regression of F2-derived F3 (F2:3) family means on the F2 plants from CL5915 × UC204A was used to estimate the heritability of F2 single plant selection for heat tolerance. Mean percentage of fruit set and fruit number per cluster of the F1 and BCP1 exceeded midparent values and were not significantly different from those of CL5915, indicating complete dominance for heat tolerance. Generation means analyses indicated that a model including simple additive and dominance effects adequately explained the inheritance of mean fruit number per cluster both years. For mean percentage of fruit set, a model including simple additive-dominance effects produced an adequately fitting model in the 1996 season but the best-fitting model included an epistatic component in the 1997 season. Heritabilities estimated for fruit set traits in 1996 and 1997, respectively, were: 0.31 and 0.21 for percentage of fruit set; 0.28 and 0.14 for mean fruit number per cluster; and 0.53 and 0.15 for flower number per cluster. The low heritabilities for percentage of fruit set and mean fruit number per cluster under high temperatures imply that single plant selection in the F2 for heat tolerance from crosses involving CL5915 is not effective and that selection should be based on replicated family testing in the F3 and later generations.
Derek W. Barchenger, Robert A. Clark III, Paul A. Gniffke, Dolores R. Ledesma, Shih-wen Lin, Peter Hanson and Sanjeet Kumar
Multilocation trials are important for breeding programs to identify high-yielding, adapted lines for a wide range of environments. In this study, we evaluated yield and yield components (fruit weight, fruit length, and fruit width) as well as days to 50% anthesis and fruit maturity of the 10 chili pepper lines in the International Chili Pepper Nursey 15 (ICPN15) distributed by the World Vegetable Center to interested cooperators worldwide. Performance data of the ICPN15 entries were received from collaborators evaluating the set in seven different environments in five countries (Indonesia, South Korea, Thailand, Taiwan, and Vietnam). Significant genotype-by-environment (G × E) interactions were detected for all traits evaluated. Additive main effect and multiplicative interaction analyses indicated high environmental influence on yield, days to 50% anthesis, and maturity, whereas genotype was the greatest contributor to variability in the market-driven yield components of fruit length, width, and weight. Four lines (ICPN15-4, -5, -7, and -10) were identified as highly stable and could serve as sources of yield and yield component stability in either short fruit market segments (ICPN15-4) or long fruit market segments (ICPN15-5, -7, and -10). We attempted to used publicly available weather data to help in explaining the source of the environmental variability; however, differences between analyzed and observed weather were too different to be useful. This is evidence that weather data should be collected at each testing environment in future studies. This study provides a basis for future studies in the stability of important horticultural traits in pepper, and highlights the need for further work in this area.
Peter M. Hanson, Ray-yu Yang, Jane Wu, Jen-tzu Chen, Dolores Ledesma, Samson C.S. Tsou and Tung-Ching Lee
Tomato (Lycopersicon esculentum Mill.) is among the most widely consumed vegetables worldwide and an important source of certain antioxidants (AO) including lycopene, β-carotene, and vitamin C. Improvement of tomato for content of AO and overall antioxidant activity (AOA) could potentially benefit human health in many countries. We evaluated 50 L. esculentum and three L. pimpinellifolium (L.) Mill. entries for contents of lycopene, β-carotene, ascorbic acid, total phenolics, and two assays for antioxidant activity [anti-radical power (ARP) and inhibition of lipid peroxidation (ILP)] for 2 years during the same period in south Taiwan. We detected high levels of genetic diversity for the AO and AOA measured in this study. Group means of the L. pimpinellifolium entries were significantly higher than L. esculentum group means for ARP, ILP, lycopene, ascorbic acid, phenolics, and soluble solids concentration, suggesting that introgression of alleles from L. pimpinellifolium may have potential to improve cultivated tomato for these traits. Ranking of entries for ILP and ARP were consistent between years, particularly for those entries with the highest means and these assays could be adopted by tomato breeders. Results from ILP and ARP assays were highly correlated (r = 0.82**) and it would be unnecessary to use both assays for tomato. Lycopene, β-carotene, ascorbic acid, soluble solids, and total phenolics were all positively correlated with ARP. Among AO, total phenolics content was most closely associated with ARP (r = 0.90**) and ILP (r = 0.83**); this suggests that phenolics make a major contribution to AOA in tomato fruit. Fruit size was negatively correlated with ARP (r = -0.74**) and ILP (r = -0.71**), indicating that combining large fruit size and high AOA will be challenging.
Peter M. Hanson, Jaw-Fen Wang, Olivia Licardo, Hanudin, Shook Ying Mah, Glen L. Hartman, Yuan-Chuen Lin and Jen-tzu Chen
Bacterial wilt (BW), caused by Pseudomonas solanacearum E.F. Smith, is one of the most destructive disease of tomato (Lycopersicon esculentum Mill.) in the tropics. Twenty tomato lines/accessions previously identified as BW-resistant were evaluated for BW reaction in fields providing high disease pressure at Subang, Indonesia; Los Baños, Philippines; Malaysian Agricultural Research and Development Institute (MARDI), Kuala Lumpur; Asian Vegetable Research and Development Center (AVRDC), Taiwan; and Taiwan Seed Improvement and Propagation Service (TSIPS). Entries also were tested in the greenhouse at the AVRDC with a P. solanacearum strain from Taiwan (Pss4) using a drench inoculation method. Objectives of the study were to identify stable sources of BW resistance for southeast Asian tomato breeding programs, and to determine the correlation between field and greenhouse reactions. Mean entry survival was 21.6% at Subang, 31.9% at Los Baños, 76.7% at the AVRDC, 93.6% at Malaysia, and 93.3% at TSIPS, indicating that most entries were resistant at MARDI and the Taiwan locations but susceptible at Subang and Los Baños. L285 (mean survival = 83.8%) and CRA 84-58-1 (mean survival = 79.4%) were the most resistant entries in the field trials. Mean survival (70.1%) of CRA 66-derived entries was significantly better than the mean of entries with resistance derived from UPCA 1169 or UPCA 1169 plus `Venus' or `Saturn'. Mean survival of AVRDC entries bred in the 1980s (59.4%) was significantly greater than mean survival of AVRDC lines bred in the 1970s (45.7%). The correlation between entry BW percent survival averaged over the five field trials and entry means from drench inoculation in the greenhouse was highly significant (r = 0.70), suggesting that the drench inoculation method is effective in selection for BW resistance.
Peter M. Hanson, Dario Bernacchi, Sylvia Green, Steven D. Tanksley, Venkataramappa Muniyappa, Attiganal S. Padmaja, Huei-mei Chen, George Kuo, Denise Fang and Jen-tzu Chen
Tomato yellow leaf curl virus (TYLCV), a heterogeneous complex of whitefly-vectored geminiviruses, is a serious production constraint of tomato (Lycopersicon esculentum Mill.) in Asia, the Middle East, and the Americas. In this study we report on mapping of a DNA fragment introgressed into cultivated tomato presumably from the wild species L. hirsutum Humb. and Bonpl. and found to be associated with TYLCV resistance. To locate introgressions of wild tomato alleles in TYLCV-resistant tomato line H24, its DNA was digested with six restriction enzymes and probed with 90 RFLP markers evenly spaced throughout the genome. This polymorphism survey revealed the presence of one wild tomato introgression each on chromosomes 8 and 11. Plants of a F2 cross between H24 and a susceptible tomato line were probed with randomly amplified polymorphic DNA (RFLP) markers linked to the targeted regions and F3 families were developed by self-pollination of F2 plants that carried none, one, or both introgressions in either homozygous or heterozygous states. Plants of F3 families, parents, and control tomato line Ty52 (homozygous for the Ty-1 allele for TYLCV tolerance) were exposed to viruliferous whiteflies (Bemisia tabaci Gennadius) in greenhouses at the Asian Vegetable Research and Development Center, Taiwan, and the University of Agricultural Sciences, Bangalore, India. Results indicated that F3 families homozygous for the introgression on chromosome 11 were resistant to TYLCV at both locations. Additional probing showed that the chromosome 11 introgression spanned markers TG36 to TG393, covering a distance of at least 14.6 centimorgans. This is the first report of TYLCV resistance in tomato mapped to chromosome 11.
Fekadu Fufa Dinssa, Peter Hanson, Dolores R. Ledesma, Ruth Minja, Omary Mbwambo, Mansuet Severine Tilya and Tsvetelina Stoilova
Amaranth (Amaranthus sp.) is an important leafy vegetable in Africa where most farmers grow unimproved landraces. Information about amaranth genetic diversity and its adaptation to different environments will help breeders develop improved commercial varieties that meet market requirements. The objectives of this study were to investigate the performances of amaranth entries for vegetable yield across locations and seasons, assess the relative contributions of genetic vs. environmental sources of variation to yield, and cluster locations into mega-environments (MEs) to suggest future test sites. Twenty-six diverse entries were evaluated for vegetable yields in replicated trials at five locations in wet-cool and hot-dry seasons in Tanzania. Season explained the highest proportion (52.1%) of the total sum of squares followed by entries (24.9%) and locations (23.0%). Mean yield across the hot-dry season trials (27.7 t·ha−1) was 47.3% greater than the mean yield across wet-cool season trials (18.8 t·ha−1). Differences among entries in vegetable yield were higher in the hot-dry season than in the wet-cool season, indicating that gain from selection is likely to be greater in the hot-dry season. Most entries performed well in either wet-cool or hot-dry season but a few entries were adapted to both seasons. Two MEs were identified, one characterized by lower altitudes, higher temperatures, and less fertile soils, and a second ME associated with higher altitudes, lower temperatures, and more fertile soils. Each ME may serve as an initial selection site for their respective target environment. Targeting a specific season may give a better chance of finding high-yielding varieties.