Soilless substrates are routinely amended with dolomite and sulfate-based micronutrients to improve fertility, but the effect of these amendments on phosphorous (P) in substrate pore-water during containerized crop production is poorly understood. The objectives of this research were as follows: compare the effects of dolomite and sulfate-based micronutrient amendments on total P (TP), total dissolved P (TDP), orthophosphate P (OP), and particulate P (PP; TP − TDP) concentrations in pour-through extracts; to model saturated solid phases in substrate pore-water using Visual MINTEQ; and to assess the effects of dolomite and micronutrient amendments on growth and subsequent P uptake efficiency (PUE) of Lagerstroemia L. ‘Natchez’ (crape myrtle) potted in pine bark. Containerized crape myrtle were grown in a greenhouse for 93 days in a 100% pine bark substrate containing a polymer-coated 19N–2.6P–10.8K controlled-release fertilizer (CRF) and one of four substrate amendment treatments: no dolomite or micronutrients (control), 2.97 kg·m−3 dolomite (FL); 0.89 kg·m−3 micronutrients (FM); or both dolomite and micronutrients (FLM). Pour-through extracts were collected approximately weekly and fractioned to measure pore-water TP, TDP, and OP and to calculate PP. Particulate P concentrations in pour-through extracts were generally unaffected by amendments. Relative to the control, amending pine bark with FLM reduced water-extractable OP, TDP, and TP concentrations by ≈56%, had no effect on P uptake efficiency, and resulted in 34% higher total dry weight (TDW) of crape myrtle. The FM substrate had effects similar to those of FLM on plant TDW and PUE, and FM reduced pore-water OP, TDP, and TP concentrations by 32% to 36% compared with the control. Crape myrtle grown in FL had 28% lower TDW but pour-through OP, TDP, and TP concentrations were similar to those of the control. Chemical conditions in FLM were favorable for precipitation of manganese hydrogen phosphate (MnHPO4), which may have contributed to lower water-extractable P concentrations in this treatment. This research suggests that amending pine bark substrate with dolomite and a sulfate-based micronutrient fertilizer should be considered a best management practice for nursery crop production.