The present study systematically investigated the effects of warehouse and greenhouse aquaponic growing conditions on consumer acceptability of different basil cultivars. A total of 105 consumers rated their liking of three basil cultivars (Nufar, Genovese, and Eleonora), each grown in three conditions (aquaponically in a greenhouse, aquaponically in a warehouse, both with Cyprinus carpio, Koi fish, and grown in soilless medium). We used linear random effect models to investigate consumer preferences for attributes of basil plants grown in different environments by controlling for individual-specific random effects. Participants generally liked the soilless medium–grown and greenhouse aquaponically grown basil plants more than the warehouse aquaponically grown plants. The soilless medium–grown basil had the highest appearance liking and flavor intensity, followed by the greenhouse aquaponic grown and then by the warehouse aquaponic grown. Aquaponically grown cultivars were rated less bitter than soilless medium–grown cultivars.