The Louisiana Dept. of Agriculture and Forestry (LDAF) conducts sweetpotato weevil [SPW, Cylas formicarius (Fabricius)] monitoring in support of the statewide SPW quarantine program. The monitoring activity primarily involves a statewide pheromone-based trapping process that generates trap data for sweetpotato beds and production fields. We conducted GIS analysis of SPW trap data, collected over three years, to assess the potential use of GIS tools in managing and interpreting the data. The LDAF has already generated shapefiles for all beds and fields in each of three years, facilitating GIS analysis. However, trap data was manually collected and statewide data was compiled and stored in spreadsheet files. Trap data was mapped to specific beds and fields in each of three years, generating layers that clearly showed fields and parishes that reported high trap counts. GIS analysis showed potential SPW “hotspots” in each year, indicating that certain beds or fields are more prone to SPW infestation than others. This information can be useful in planning SPW management strategies by growers and other stakeholders. The GIS database also provides the foundation for the development of descriptive and predictive models of SPW occurence in Louisiana. Compiling the SPW trap data into a GIS database allows the data to be distributed over the Internet, facilitating real-time access by stakeholders.
Arthur Villordon*, Craig Roussel and Tad Hardy
Arthur Villordon, Craig Roussel and Tad Hardy
The Louisiana Department of Agriculture and Forestry (LDAF) conducts sweetpotato weevil (SPW) (Cylas formicarius Fabricius) monitoring as part of the statewide SPW quarantine program. This activity involves a statewide pheromone-based trapping program that monitors sweetpotato beds and production fields. We conducted GIS analysis of SPW trap data, collected over three years, to assess the potential use of publicly available GIS tools in managing and interpreting the data. Trap data was mapped to specific beds and fields in each of three years, generating layers that clearly showed fields and parishes that reported high trap counts. GIS analysis showed potential SPW hotspots in each year, indicating that certain beds or fields are predisposed to SPW infestation than others. This information can be useful in planning SPW management strategies by growers and other stakeholders. The GIS database also provides the foundation for the development of descriptive and predictive models of SPW occurence not only in Louisiana, but in other states where SPW is a potential pest. For example, using presence data for Louisiana and Genetic Algorithm for Rule Set Prediction (GARP), a GIS-based ecological niche modelling tool, we were able to generate predicted distribution using mean minimum temperature for January as the predictor variable. Although additional work is needed to identify other predictor variables and verify the models, the results demonstrate the potential use of GIS-based tools for generating warnings or advisories related to SPW.
Arthur Villordon, Don La Bonte and Robert Jarret
The presence of copia-like retrotransposon sequences in sweetpotato [Ipomoea batatas (L.) Lam.] was investigated. PCR-based amplification using primers to highly conserved copia-like reverse transcriptase sequences produced several products corresponding to the expected target size (≈300 bp) that were subsequently isolated and cloned. A random sample of the clones were sequenced and all six reading frames were translated into their corresponding amino acid sequences. Sequence analysis revealed the presence of 22 copia-like reverse transcriptase sequences corresponding to various subfamilies. The presence of several sequence families in the genome is indicative of past or recent transposition activity. Southern blot analysis suggested that these copia-like sequences were present in several hundred copies in the sweetpotato genome. Data also showed retrotransposon insertion polymorphisms between a limited sample of virus-tested and virus-infected sweetpotato clones, indicating putative activity and mobility. This investigation documented the presence of copia-like retrotransposon sequences in the sweetpotato genome. This is an important step in clarifying the possible association between mobile genetic elements and the unusually high incidence of somatic mutations that may result in clonal decline in sweetpotato and other asexually propagated crops. Data presented provides information on the possible use of retrotransposons as genetic markers for sweetpotato crop improvement.
Arthur Q. Villordon and Don R. LaBonte
Polymorphism analysis and yield tests were conducted among `Jewel' sweetpotato clones [Ipomoea batatas (L.) Lam] obtained from eight state foundation seed programs. Initially, 38 arbitrary primers generated a total of 110 scorable DNA fragments in a sample of virus-indexed plants from each clone source. The number of marker loci scored for each primer varied from one to eight with an average of 2.89. Twenty-one bands (19.1%) were scored as putative polymorphic markers based on the presence or absence of amplified products. Further estimation of variability within each clone source was accomplished by an assay of 10 sample plants per clone group by 14 marker loci generated by four selected primers. Polymorphic bands ranged from 7.1% to 35.7 % in five of eight clone groups. Field studies show variation in nearly all yield grades measured. In three tests during the 1991 and 1992 seasons, yield differences ranged from 27% to 46% within the economically important U.S. no. 1 root grade. The results suggest the usefulness of arbitrarily-primed markers in detecting intra-clonal sweetpotato DNA polymorphisms and indicate an underlying genetic cause for phenotypic variability in the crop.
Arthur Q. Villordon and Don R. LaBonte
Genetic uniformity was assessed among sweetpotato (Ipomoea batatas) clones propagated through adventitious and nodal procedures. A single sprout each of `Jewel,' `Sumor,' and L87-95 was used as source of clonal plants that were simultaneously propagated through conventional adventitious procedures and a tissue culture-based nodal culture technique. A sample of 15 decamer primers generated 64 scorable amplified fragments in a PCR-based assay, 29 of which were putatively polymorphic across n = 60 samples (10 each of nodal and adventitiously derived plants/genotype). Within adventitiously derived materials, putative polymorphisms ranged from 4.7% to 31.3% depending on the genotypic class. In contrast, putative polymorphisms ranged from 0.0% to 3.1% among nodally derived samples. Marker loci differentiated genotypes as well as putative marker phenotype variants through a multidimensional scaling analysis of the genetic similarity matrix. An `analysis of molecular variance' shows that genotypic effects accounted for 88.7% of the total molecular marker variability, while propagation effects (within genotypic groups) accounted for 11.3%. Results confirm that clonal plants derived from preexisting meristematic regions are more genetically uniform than plants propagated from adventitious origins.
Arthur Villordon, Don LaBonte and Julio Solis
A scanner-based minirhizotron (MR) system detected initial adventitious root (AR) development associated with transplant establishment. The system also documented the transition of ARs into pencil roots (PRs) and, in some cases, storage roots (SRs). In general, the MR system underestimated destructive sampling-based (DS) estimates of newly initiated AR (NAR), PR, and SR counts. Angled or vertical single sampling tubes underestimated NAR count by 85% and 79%, respectively. Regardless of installation position, single tube-based measurements underestimated PR and SR count by 83% and 95%, respectively. However, it was found that two vertically installed tubes underestimated NAR count by only 48%. The potential ability of paired sampling tubes to discriminate NAR count differences in response to experimental treatments was confirmed in a simple rain shelter experiment. The paired MR and DS systems detected 83% and 56% reduction in NAR count among plots with rain shelters, respectively. However, it appeared that the presence of tubes interfered with SR formation of monitored AR segments. Despite this limitation, the results show the potential for incorporating MR systems in ongoing and future studies that aim to qualitatively and quantitatively document sweetpotato AR system response to agroclimatic variables and management interventions during the initial SR bulking stage.
Arthur Q. Villordon and Don R. LaBonte
Our research examined whether plants originating from adventitious sprouts from fleshy sweetpotato roots are genetically more variable than plants that arise from pre-existing meristematic regions, i.e., nodes. Our study compared one plant each of `Jewel', `Sumor', and L87-95 clonally propagated for seven generations both nodally and through adventitious sprouts. PCR-based analysis of 60 samples (10 nodal and 10 adventitiously derived plants/genotype) showed 20% polymorphism among adventitious materials vs. 6% among nodally derived plants. An “analysis of molecular variance” showed that differences between propagation methods accounted for 30% of the total marker variability. Our results support previous findings that, relative to non-meristematic materials, meristematic regions strictly control cell division and DNA synthesis that exclude DNA duplication and other irregularities.
Arthur Villordon, Christopher Clark, Don Ferrin and Don LaBonte
Predictive models of optimum sweetpotato (Ipomoea batatas) harvest in relation to growing degree days (GDD) will benefit producers and researchers by ensuring maximum yields and high quality. A GDD system has not been previously characterized for sweetpotato grown in Louisiana. We used a data set of 116 planting dates and used a combination of minimum cv, linear regression (LR), and several algorithms in a data mining (DM) mode to identify candidate methods of estimating relationships between GDD and harvest dates. These DM algorithms included neural networks, support vector machine, multivariate adaptive regression splines, regression trees, and generalized linear models. We then used candidate GDD methods along with agrometeorological variables to model US#1 yield using LR and DM methodology. A multivariable LR model with the best adjusted r2 was based on GDD calculated using this method: maximum daily temperature (Tmax) – base temperature (B), where if Tmax > ceiling temperature [C (90 °F)], then Tmax = C, and where GDD = 0 if minimum daily temperature <60 °F. The following climate-related variables contributed to the improvement of adjusted r2 of the LR model: mean relative humidity 20 days after transplanting (DAT), maximum air temperature 20 DAT, and maximum soil temperature 10 DAT (log 10 transformed). In the DM mode, this GDD method and the LR model also demonstrated high predictive accuracy as quantified using mean square error. Using this model, we propose to schedule test harvests at GDD = 2600. The harvest date can further be optimized by predicting US#1 yield using GDD in combination with climate-based predictor variables measured within 20 DAT.
Julio Solis, Arthur Villordon, Niranjan Baisakh, Don LaBonte and Nurit Firon
Greenhouse and field culture systems were used to study the effect of drought conditions on the storage root (SR) formation in ‘Beauregard’ sweetpotato (Ipomoea batatas). In the greenhouse culture system, drought was simulated by withholding water for 5 and 10 days after transplanting (DAT) cuttings in dry sand. Control plants received water at planting and every 3 days thereafter. In the field studies, natural drought conditions and selective irrigation were used to impose water deprivation during the critical SR formation period. Greenhouse drought for 5 and 10 DAT reduced the number of SRs by 42% and 66%, respectively, compared with the controls. Field drought resulted in a 49% reduction in U.S. #1 SR yield compared with the irrigated condition. Quantitative real-time polymerase chain reaction (PCR) analysis showed differential expression of a set of sweetpotato transcription factors and protein kinases among greenhouse-grown plants subjected to well-watered conditions and water deficit during 5 DAT. A significant enhancement of expression was observed for known drought stress-associated genes such as an abscisic acid-responsive elements-binding factor, dehydration-responsive element-binding factor, and homeo-domain-zip proteins. Members of calcium-binding proteins showed differential expression under drought stress. For the first time it is reported that knotted1-like homeobox and BEL1-like genes showed altered expression in response to drought stress under a greenhouse condition. In summary, the results suggest that water deprivation during the SR formation period influences root development and expression patterns of stress-responsive genes and those previously found associated with SR formation in sweetpotato.
Arthur Villordon, Wambui Njuguna, Simon Gichuki, Philip Ndolo and Don Labonte
Web-accessible germplasm databases allow stakeholders to interactively search and locate information in real time. These databases can also be configured to permit designated users to remotely add, delete, or update information. These resources assist in decision-making activities that are related to germplasm documentation, conservation, and management. We report the development of a web-accessible database of Kenyan sweetpotato (Ipomoea batatas) varieties using open source software. Kenya is located in eastern Africa, a region that is considered one of the centers of diversity for sweetpotato. We describe the software applications used in developing the germplasm database as well as the web interface for displaying and interactively searching records. This report demonstrates that open source software can be used in developing a web-enabled database with management features similar to those found in proprietary or commercial applications.