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Emmanouil N. Tzitzikas, Antonio J. Monforte, Abdelhak Fatihi, Zacharias Kypriotakis, Tefkros A. Iacovides, Ioannis M. Ioannides, and Panagiotis Kalaitzis

Development and utility of cleaved amplified polymorphic sequences (CAPS) and restriction fragment length polymorphisms (RFLPs) linked to the Fom-2 fusarium wilt resistance gene in melon ( Cucumis melo L.) Theor. Appl. Genet. 99 453 463

Open access

Taifeng Zhang, Jiajun Liu, Sikandar Amanullah, Zhuo Ding, Haonan Cui, Feishi Luan, and Peng Gao

lycopersicum ( Zhao et al., 2016 )]. During this study, whole-genome sequencing and BSA were performed for primary and fine mapping of genes controlling dwarfism. In addition, cleaved amplified polymorphism sequence (CAPS) and kompetitive allele

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Amnon Levi and Kai-shu Ling

of disease symptoms for plants inoculated with ZYMV-FL in the greenhouse, an enzyme-linked immuno-sorbent assay (ELISA), and marker-assisted selection using two cleaved amplified polymorphic sequence (CAPS) markers of the eIF4E gene locus (CAPS1, CAPS

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Mariem Bouhadida, Juan P. Martín, Gennady Eremin, Jorge Pinochet, María Á. Moreno, and Yolanda Gogorcena

, 1998 ). This PCR-RFLP method, also known as cleaved amplified polymorphic sequences (CAPS) ( Konieczny and Ausubel, 1993 ), is a readily accessible laboratory technique that can be used to evaluate large portions of the chloroplast genome in numerous

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Matthew D. Robbins, Mohammed A.T. Masud, Dilip R. Panthee, Randolph G. Gardner, David M. Francis, and Mikel R. Stevens

genotyping. Marker-assisted selection for Ph-3 and Sw-5 was accomplished using previously identified markers. Ph-3 was indirectly selected using the cleaved amplified polymorphic sequences (CAPS) markers TG328 and TG591 (M. Mutschler, personal

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Hirotoshi Tsuda, Hisato Kunitake, Mai Yamasaki, Haruki Komatsu, and Katsunori Yoshioka

) . The total DNA was used for analyses of nuclear and cytoplasmic DNA, including random amplified polymorphic DNA (RAPD) and cleaved amplified polymorphic sequence (CAPS) analyses. RAPD analysis of nuclear DNA was performed by the method of Williams et

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Yuanfu Ji, Jay W. Scott, David J. Schuster, and Douglas P. Maxwell

, linkage analysis, and QTL mapping. All markers used in this study were PCR-based, including sequence-characterized amplified region (SCAR) and cleaved amplified polymorphic sequence (CAPS) markers taken from the public domain or designed from public

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Taifeng Zhang, Jiajun Liu, Shi Liu, Zhuo Ding, Feishi Luan, and Peng Gao

reaction (PCR) amplification was performed to construct a paired-read sequencing library. The DNA libraries were sequenced using the Illumina HiSeqTM 2500 platform (Biomarker, Beijing, China) to generate 125 base paired-end reads. BSA analysis. The reads of

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Xiaohe Song and Zhanao Deng

sequence characterized amplified region/cleaved amplified polymorphic sequence markers from cloned gerbera RGC sequences ( Song et al., 2012 ). These markers were polymorphic between UFGE 4033 and ‘Sunburst Snow White’, but they did not detect polymorphisms

Open access

Tong Geon Lee, Samuel F. Hutton, and Reza Shekasteband

1706’ reference genome assembly. Molecular marker analysis. Cleaved amplified polymorphic sequences (CAPS), derived CAPS, and HRM markers for fine mapping were designed using SNP data obtained by the tomato array genotyping and by WGS. Marker