Amur grape (Vitis amurensis) is a dioecious species. To elucidate the time of and reason for pistil abortion in male amur grape from the perspective of cytology, we observed the sections of pistil of a male line during its development using optical and transmission electron microscopes. The abnormity in the morphology of nucellar cell and the development of various organelles appeared before the abnormity of functional megaspore mitosis. Programmed cell death (PCD) of the nucellar cells might be an important reason for mitosis disorder, leading to the abortion of pistil in male flower. However, the abortion can be eliminated by forchlorfenuron treatment, resulting in the recovery of functional pistil in male amur grape. This study provides cytological information on the gender conversion mechanism in male amur grape, which can promote gender determination studies in Vitis species.