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Dario J. Chavez and José X. Chaparro

Citrus kinokuni ‘Mukaku kishu’ PI539530 and its progeny were studied to identify random amplified polymorphic DNA (RAPD) primers associated with seedlessness. Ninety-one F1 [(Robinson op) × C. kinokuni] individuals showed a 1:1 segregation ratio between seedless and seeded phenotypes with seedless as a single dominant gene. Bulked segregant analysis was used to identify markers associated with the seedless locus. Eighteen RAPD primers were mapped into a partial linkage group (≈55.8 cM length) with four RAPD primers flanking the seedless locus: OPAI11-0.8 at 8.7 cM, OPAJ19-1.0 at 8.4 cM, OPM06r-0.85 at 4.3 cM, and OPAJ04r-0.6 at 6.4 cM. The identification of molecular markers linked to C. kinokuni Fs seedless locus constitutes an important and major tool for citrus breeding and selection.

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Dennis J. Werner and Jose X. Chaparro

Genetic interaction of the pillar (PI) and weeping (WE) growth habit genotypes was investigated in peach [Prunus persica (L.) Batsch]. Data from F2, BC1P1, and BC1P2 families showed that PI (brbr) was epistatic to the expression of WE (plpl). A unique growth habit not previously described in peach, and referred to as arching (AR), was recovered in the F2 family. Arching trees showed an upright phenotype similar to Brbr heterozygotes, but had a distinct curvature in the developing shoots. Progeny testing of AR trees revealed their genotype is Brbrplpl.

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Jose X. Chaparro, Ronald R. Sederoff, and Dennis J. Werner

Total cellular DNA has been extracted from leaves and\or seed of Prunus dulcis, P. persica, P. mira, P. davidiana, P. persica subsp. ferganensis, and P. triloba. Chloroplast restriction fragments have been visualized by Southern blot analysis using heterologous probes from a petunia chloroplast library. Analysis of preliminary data separates the species into three groups. The first contains P. dulcis, P. mira, and P. davidiana; the second P. kansuensis, P. persica, and P. persica subsp. ferganensis; and the third P. triloba.

PCR amplification using oligos for cytosolic glyceraldehyde-3-phosphate dehydrogenase yields genomic fragments approximately 1kb in size from P. dulcis and P. triloba. Sequence analysis will be performed to determine species relationships at the gene level.

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Dario J. Chavez, Thomas G. Beckman, and José X. Chaparro

Prunus phylogeny has been extensively studied using chloroplast DNA (cpDNA) sequences. Chloroplast DNA has a slow rate of evolution, which is beneficial to determine species relationships at a deeper level. The chloroplast-based phylogenies have a limitation due to the transfer of this organelle by interspecific hybridization. This creates difficulties when studying species relationships. Interspecific hybrids in Prunus occur naturally and have been reported, which creates a problem when using cpDNA-based phylogenies to determine species relationships. The main goal of this project was to identify nuclear gene regions that could provide an improved phylogenetic signal at the species level in Prunus. A total of 11 species in Prunus and within section Prunocerasus were used. Two peach (Prunus persica) haploids were used to test the reliability of the molecular markers developed in this project to amplify single-copy genes. A total of 33 major genes associated with vernalization response, 16 with tree architecture, and 3 with isozymes, were tested. Similarly, 41 simple sequence repeat (SSR) markers, seven cpDNA regions, and the internal transcribed spacer (ITS) region, were used. Multiple gene regions were identified and provided the greatest number of characters, greatest variability, and improved phylogenetic signal at the species level in Prunus section Prunocerasus. Out of those, trnH-psbA, PGI, MAX4, AXR1, LFY, PHYE, and VRN1 are recommended for a phylogenetic analysis with a larger number of taxa. The use of potentially informative characters (PICS) as a measure of how informative a region will be for phylogenetic analyses has been previously reported beneficial in cpDNA regions and it clearly was important in this research. This will allow selecting the region(s), which can be used in phylogenetic studies with higher number of taxa.

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Thomas G. Beckman, Jose X. Chaparro, and Patrick J. Conner

Open access

Shirin Shahkoomahally, Jose X. Chaparro, Thomas G. Beckman, and Ali Sarkhosh

The rootstock is an essential element for orchard management, influencing scion growth, nutrient concentration, and fruit quality. Seasonal variations in leaf nutrients of ‘UFSun’ grafted on five different rootstocks (‘Flordaguard’, ‘Barton’, ‘MP-29’, ‘P-22’, and ‘Okinawa’) were investigated during the 2017–18 growing season in Citra, FL. There was no significant variation in the macronutrient concentrations (N, P, K, Mg, Ca, and S) among different rootstocks; however, ‘UFSun’ on ‘Okinawa’ and ‘Flordaguard’ showed greater concentrations of Ca, K, and Mg concentration than other rootstocks. In contrast, ‘Flordaguard’ showed less potential to accumulate P as compared with other rootstocks. The Ca concentration was lowest in ‘MP-29’ and ‘Barton’ in April and June. The concentration of macronutrients (N, P, K, Mg, Ca, and S) in leaves was greater in April and October than in December and June. With respect to rootstocks, macronutrients in December and June were the highest in ‘Okinawa’ and the lowest in ‘Barton’. In April, the lowest concentration of macronutrient was recorded in ‘Barton’, whereas the highest concentrations were found in ‘P-22’, ‘Okinawa’, and ‘Flordaguard’. The highest leaf micronutrient concentrations were found in ‘MP-29’ and ‘Barton’, and the lowest in ‘Okinawa’ and ‘Flordaguard’ in June and October. For all rootstocks, concentrations of micronutrients increased between leaf growth in April and senescence in October. The micronutrient concentrations of leaves decreased during December. The widest dynamic changes during the vegetative cycle were found on ‘P-22’. Seasonal trends were more consistent for micronutrients than for macronutrients.

Open access

Elliot H. Norden, Paul M. Lyrene, and Jose X. Chaparro

A progeny of 55 blueberry seedlings produced by pollinating 4301 flowers of tetraploid highbush blueberry cultivars with pollen from 19 different diploid Vaccinium elliottii plants was studied to determine hybridity and ploidy. Of the 21 seedlings whose phenotypes were intermediate between parental types, indicating hybridity, 18 were triploid and three were tetraploid. Pollen of the triploids, when viewed at ×250, was almost all shrunken and aborted, although some triploid hybrids produced a few large, plump microspores in dyads or monads. Triploids produced no seed when pollinated with pollen from 4x highbush or 2x V. elliottii or when open-pollinated outside the greenhouse in the presence of fertile diploid and tetraploid blueberries. Tetraploid hybrids produced large populations of vigorous seedlings when intercrossed. Both triploid and tetraploid F1 hybrids were intermediate between the parents in leaf size and flower size. The triploids produced no berries; the tetraploids were intermediate between the parents in berry size but averaged lower in Brix and berry firmness than either parent. Seven additional F1 hybrids from reciprocal crosses were obtained by pollinating 2309 flowers of 2x V. elliottii with pollen from tetraploid highbush cultivars. Although five V. elliottii clones served as female parents in these crosses, only one produced any seedlings. Six of the seven hybrids flowered and were fertile tetraploids; one was a sterile triploid.

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Marilyn Rivera-Hernández, Linda Wessel-Beaver, and José X. Chaparro

Squash and pumpkins (Cucurbita sp.) are important contributors of beta-carotene to the diet. Consumers of tropical pumpkin and butternut squash (both C. moschata Duchesne) prefer a deep orange mesocarp color. Color intensity is related to carotene content. Among the five domesticated Cucurbita species, C. moschata and C. argyrosperma Huber have a close relationship. In crosses between these two species, fertile F1 plants can be easily obtained when using C. argyrosperma as the female parent. This research studied the relationship between and within C. moschata and C. argyrosperma by sequencing three genes in the carotenoid biosynthesis pathway and generating gene trees. Genotypes used in the study differed in flesh color from very pale yellow to dark orange. In some cases, haplotypes were associated with a particular mesocarp color. Further study of these types of associations may improve our understanding of color development in Cucurbita. The frequency of single nucleotide polymorphisms (SNPs) in the sequenced fragments was low. There were more SNPs and more heterozygotes among C. moschata accessions than among C. argyrosperma accessions. Haplotypes of the outgroups (C. ficifolia C.D. Bouché and C. maxima Duchesne) were always distinct from C. moschata and C. argyrosperma. These later species had both distinct haplotypes and shared haplotypes. Haplotypes shared among species tended to be maintained in the same branch of the phylogenetic tree, suggesting either gene flow between the species or a common ancestral gene. Both explanations suggest a close genetic and evolutionary relationship between C. moschata and C. argyrosperma.

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Omar Carrillo-Mendoza, José X. Chaparro, and Jeffrey Williamson

Tree size and branching control has gained importance as labor and pruning costs have increased. In addition, the occurrence of blind nodes is a critical factor that affects peach tree architecture and productivity in subtropical climates. Seven backcross families segregating for branching and blind nodes were developed using ‘Flordaguard’ peach × P. kansuensis or ‘Tardy Nonpareil’ almond F1s backcrossed to ‘AP00-30WBS’, ‘UFSharp’, or ‘UF97-47’ peach selections and evaluated for branching index and blind node frequency during the winters of 2010 and 2011. P. kansuensis backcrosses presented increased branching and lower blind node incidence, whereas almond backcrosses presented less branching and higher blind node incidence, resembling the P. kansuensis and almond F1 parents, respectively. There was also broad variability for branching and blind nodes within the P. kansuensis and ‘Tardy Nonpareil’ almond backcross families influenced by the peach parents that were used to generate the backcross populations. The moderate heritability and year-to-year correlation for these traits indicate that they are affected by the environment, but selection for reduced branching and lower blind node incidence is feasible.

Free access

Omar Carrillo-Mendoza, Wayne B. Sherman, and José X. Chaparro

Trees without excessive branching are desirable for the reduction of pruning costs. Genetic diversity for less twiggy genotypes exists in peach and a branching index was developed for evaluation and selection of genotypes with reduced branching. The index is based on the number of total first-order branches and the number of second-order, third-order, and fourth-order branches measured on three randomly selected first-order branches. Index values were highly correlated (r 2 ≈0.7) with the total number of branches over two growing seasons and served as a good predictor of branching patterns observed in the third growing season. Thus, the developed branching index is a useful tool in peach breeding, allowing for the early selection of trees with more desirable tree architecture.