Subirrigation is an economically attractive irrigation method for producing bedding plants. Because excess fertilizer salts are not leached from the growing medium, salts can accumulate in the growing medium. Fertilizer guidelines developed for overhead irrigation may not be appropriate for subirrigation systems. Our objective was to quantify the effect of the fertilizer concentration (N at 0, 135, 285, and 440 mg·L–1) on whole-plant CO2 exchange and growth of subirrigated pansies. Whole plant CO2 exchange rate (net photosynthesis and dark respiration) was measured once every 10 min for 31 days. Whole-plant photosynthesis, dark respiration, and carbon use efficiency increased during the experiment. Fertilizer concentration started to affect the growth rate of the plants after approximately 7 days. Maximum photosynthesis and growth were achieved with N at about 280 mg·L–1 in the fertilizer solution [electrical conductivity = 2 dS·m–1]. Growth was reduced by ≈10% when the plants were fertilized with N at 135 and 440 mg·L–1 compared to 280 mg·L–1. Growth of plants watered without any fertilizer was greatly reduced, and plants showed symptoms of N and K deficiency. The size of the root system decreased and the shoot: root ratio increased with increasing fertilizer concentration, but the size of the root system was adequate in all treatments. These results indicate that subirrigated pansies can tolerate a wide range of fertilizer concentrations with relatively little effect on plant growth.