RFLP markers were used to study genetic diversity among California walnut (Juglans regia L.) cultivars and germplasm collected worldwide. 16 of 21 RFLP markers were polymorphic in the 48 walnut accessions tested. Seven RFLP markers permitted unique identification of all walnut cultivars. All genotypes were heterozygous at approximately 20% of the loci for both California and worldwide germplasm. California walnut germplasm contained 65% of the worldwide allelic diversity. Cluster analysis of genetic distance between accessions and principal component analysis of allelic genotypes showed two major groups of walnut domestication. California germplasm was associated with germplasm from France, Central Europe, and Iran, and had less genotypic similarity with germplasm from Nepal, China, Korea, and Japan.
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